LIFE CHEMISTRY 101

DIY SPECTROSCOPY LAB

Quantitative Analysis Using Smartphone Colorimetry - Interactive Edition

SESSION: ---
[READY]
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Pre-Lab: Light, Color, and Beer's Law

LEARNING OBJECTIVES
  • Construct a simple sample box (DIY colorimeter) to measure light transmission through colored solutions
  • Prepare standard solutions via serial dilution (100%, 80%, 60%, 40%, 20%, 0%)
  • Apply Beer's Law (\(A = \varepsilon \cdot l \cdot c\)) by plotting absorbance against concentration
  • Calculate transmittance (\(T = I/I_0\)) and absorbance (\(A = -\log_{10} T\)) from measured data
  • Determine an unknown concentration from a calibration curve
  • Understand the relationship between color, light absorption, and concentration

Introduction to Spectroscopy

Spectroscopy is the study of how matter interacts with light. When light passes through a colored solution, some wavelengths are absorbed while others pass through (are transmitted). The color we see is the light that is NOT absorbed.

For example, grape juice appears purple/violet because it absorbs light in the yellow-green region of the spectrum and transmits (reflects) red and blue wavelengths, which combine to create the purple color we perceive.

Beer's Law (Beer-Lambert Law)

Beer's Law describes the relationship between the concentration of a solution and the amount of light it absorbs:

$$A = \varepsilon \cdot l \cdot c$$
VARIABLE DEFINITIONS
  • \(A\) = Absorbance (unitless) - how much light is absorbed
  • \(\varepsilon\) = Molar absorptivity (L·mol⁻¹·cm⁻¹) - how strongly the substance absorbs
  • \(l\) = Path length (cm) - distance light travels through solution
  • \(c\) = Concentration (mol/L or %) - amount of absorbing species

Transmittance and Absorbance

When light enters a sample, we measure what comes out the other side:

$$\text{Transmittance: } T = \frac{I}{I_0} \quad | \quad \text{Absorbance: } A = -\log_{10}(T)$$
WHERE:
  • \(I_0\) = Initial light intensity (measured with blank/water)
  • \(I\) = Light intensity after passing through sample
  • \(T\) = Transmittance (fraction of light that passes through, 0 to 1)
  • \(A\) = Absorbance (typically 0 to 2 for measurable samples)

Why Green Paper for Purple Juice?

Grape juice absorbs GREEN light most strongly. By using green construction paper as our background light source, we maximize the signal change as concentration increases. The app will measure the green channel intensity - as grape juice concentration increases, less green light passes through, and the green channel reading decreases.

PRE-LAB QUESTIONS

Complete these questions before coming to lab:

QUESTION 1:

Write Beer's Law equation and define each variable:

QUESTION 2:

If light intensity through a blank (\(I_0\)) is 200 and through a sample (\(I\)) is 100, calculate:

a) Transmittance (\(T = I/I_0\))

b) Absorbance (\(A = -\log_{10} T\))

Show your calculations:

QUESTION 3:

Grape juice appears purple/violet. Based on the color wheel, what color light does it primarily absorb? Why are we using green construction paper as our background?

QUESTION 4:

Which RGB channel (Red, Green, or Blue) should show the greatest change in intensity as grape juice concentration increases? Explain your reasoning.

QUESTION 5:

Name TWO real-world applications where colorimetry/spectroscopy is used:

MATERIALS AND EQUIPMENT

Provided by Lab

  • Grape juice (stock solution, 100%)
  • Unknown grape juice sample
  • Distilled water
  • Clear plastic cuvettes or test tubes (7)
  • Graduated cylinders (10 mL)
  • Pipettes (various sizes)
  • Test tube rack
  • Green construction paper
  • Labels/marker

Student Provided / At Station

  • Smartphone with RGB color app
  • Cardboard box (shoebox size)
  • Scissors
  • Tape (masking or clear)
  • Calculator
  • Book (for elevation if needed)
  • Ruler (optional)

Required App

CAROLINA RGB COLORIMETER

Download this app before coming to lab:

Carolina RGB Colorimeter (iOS)

This app displays real-time RGB values from your phone's camera, allowing us to measure light intensity passing through our samples.

BUILDING YOUR DIY COLORIMETER BOX

Follow these steps to construct your colorimeter. Consistency in construction is essential for accurate measurements.

1
Get your box: Use the small cardboard box provided. It's the perfect size to fit a cuvette or test tube standing upright inside.
2
Cut the front viewing hole: On the front panel (where your phone camera will be positioned), cut a rectangular opening approximately 5-8 cm wide and 5-8 cm tall, centered on the panel. This is where your phone camera will "see" through to the sample.
3
Remove the back panel: Cut out the ENTIRE back panel of the box. This allows ambient room light to illuminate the colored construction paper that will serve as your light source background.
4
Position the construction paper: Tape a sheet of GREEN construction paper flat behind the open back of the box. The paper should be fully visible through the front viewing hole when you look through the sample position. Keep it flat and wrinkle-free.
5
Secure and stabilize: Place the box on a stable surface (use a book for elevation if needed so the viewing hole is at phone-camera height). Tape the box down securely - nothing should move between measurements!
6
Check your lighting: Use steady room light (dim overhead lights if too bright). Avoid direct sunlight as it causes fluctuating readings. The light path is: room light -> reflects off green paper -> passes through sample -> exits front hole -> enters phone camera.
7
Test your RGB app: Open your color analyzer app and place your phone camera flush against the front viewing hole. If your app allows, lock the exposure and focus (tap-and-hold usually works). Place a blank (water) in the sample position - the green paper should appear bright in the green channel.
Pro Tip: Consistency is everything! Mark the exact position where you place the cuvette/tube. Every sample must go in the SAME spot with the SAME orientation.

Light Path Diagram

    ROOM LIGHT
        |
        v
+------------------+
|                  |  GREEN CONSTRUCTION
|   [OPEN BACK]  <---- PAPER (light source)
|                  |
|    [CUVETTE]     |  Sample position
|       |          |  (mark this spot!)
|       v          |
|   [FRONT HOLE] ------> PHONE CAMERA
|                  |      (RGB app)
+------------------+

Light reflects off green paper, passes through
sample, exits front hole to phone camera.
                

Colorimeter Box Diagram

Sketch your colorimeter setup and label: Front viewing hole, Sample/cuvette position, Green construction paper, Phone placement, Light path (arrows)

PREPARING STANDARD SOLUTIONS (Serial Dilutions)

You will prepare 6 standard solutions by diluting the grape juice stock (100%) with distilled water. Each solution should have a total volume of 10 mL.

Standard Concentration (%) Grape Juice (mL) Distilled Water (mL) Total Volume (mL)
Blank 0% 0 10 10
Std 1 20% 2 8 10
Std 2 40% 4 6 10
Std 3 60% 6 4 10
Std 4 80% 8 2 10
Std 5 100% 10 0 10

Expected Color Gradient

0%
20%
40%
60%
80%
100%

Dilution Verification

DILUTION FORMULA: \(C_1V_1 = C_2V_2\)

Verify Standard 2 (40% grape juice):

\(C_1\) (stock concentration) = %

\(V_1\) (volume of stock) = mL

\(C_2\) (desired concentration) = %

\(V_2\) (total final volume) = mL

Verification:

DATA COLLECTION

1
Select your measurement channel: Test with your blank (water) and concentrated standard (100%). The GREEN channel should show the largest drop in intensity from blank to concentrated when using grape juice with green paper.
2
Measure the blank (\(I_0\)): Place your blank solution (0% grape juice = water) in the colorimeter box. Record the GREEN channel intensity. This is your \(I_0\) value.
3
Measure from LOW to HIGH: Starting with 20%, measure each standard. Take 2 readings per sample and record the average intensity (\(I\)).
4
Calculate T and A: For each measurement, the transmittance and absorbance will be calculated automatically in the table below.
5
Measure the unknown: Following the same procedure, measure your unknown sample and record all values.
$$T = \frac{I}{I_0} \quad | \quad A = -\log_{10}(T)$$
BLANK (\(I_0\)) INTENSITY

Channel: GREEN

\(I_0\) =

Data Table

Enter your intensity readings. Transmittance (T) and Absorbance (A) will calculate automatically.

Sample Conc. (%) \(I\) (Reading 1) \(I\) (Reading 2) \(I\) (Average) \(T = I/I_0\) \(A = -\log(T)\)
Blank 0 \(I_0\) (entered above) 1.000 0.000
Std 1 20 -- -- --
Std 2 40 -- -- --
Std 3 60 -- -- --
Std 4 80 -- -- --
Std 5 100 -- -- --
Unknown ? -- -- --
CRITICAL: Do NOT change the lighting, box position, or camera settings between measurements. Consistency is essential for accurate results!

Sample Calculation for Standard 3 (60%)

SHOW YOUR WORK:

Calculate \(T\) and \(A\) for Standard 3 using your recorded values:

CALIBRATION CURVE AND ANALYSIS

Your calibration curve plots Absorbance (A) vs. Concentration (%). The graph updates in real-time as you enter data.

Line Equation
\(A =\) m \(\cdot C +\) b
\(R^2\)
--

Determining Unknown Concentration

METHOD 1: GRAPHICAL
  1. Locate the absorbance of your unknown on the y-axis
  2. Draw a horizontal line to intersect the calibration curve
  3. From intersection, draw vertical line to x-axis
  4. Read the concentration value
METHOD 2: MATHEMATICAL

Using the equation \(A = m \cdot C + b\), solve for \(C\):

$$C = \frac{A - b}{m}$$

Your unknown absorbance: --

Calculated unknown concentration:

FINAL RESULT

Unknown Grape Juice Concentration:

-- %

Enter your final answer below:

%

POST-LAB QUESTIONS

QUESTION 1:

Discuss TWO potential sources of error in this experiment (besides auto-exposure on your phone camera). For each error, explain how it could impact your calibration curve's linearity or accuracy.

Error 1:

Error 2:

QUESTION 2:

Clinical Application: In a hospital, Beer's Law is used in pulse oximetry to measure blood oxygen saturation. If a patient has jaundice (high bilirubin, which absorbs blue light), how might this interfere with the oximeter's red/infrared readings? What could clinicians do to address this interference?

QUESTION 3:

Your calibration curve should ideally pass through the origin (0,0). Did yours? If it had a y-intercept significantly different from zero, what might have caused this?

QUESTION 4:

Beer's Law states that absorbance is directly proportional to concentration. What would you expect to happen to this linear relationship if you tested very high concentrations (beyond 100% of what we used)? Explain why Beer's Law might "fail" at high concentrations.

QUESTION 5:

If you wanted to measure the concentration of a YELLOW solution instead of grape juice:

a) What color construction paper would you use?

b) Which RGB channel would you measure?

c) Explain your reasoning:

QUESTION 6:

A classmate got a negative absorbance value for one of their samples. What likely went wrong, and how should they troubleshoot this issue?

LAB COMPLETION CHECKLIST

Pre-lab questions (Part A) completed before lab
DIY colorimeter box constructed and tested
Box diagram sketched with labels
All 6 standard dilutions prepared correctly
Dilution verification calculation completed
RGB channel selected and justified
Data table completely filled (all I, T, and A values)
Sample calculation for Standard 3 shown
Calibration curve generated
Best-fit line drawn through/near origin
Unknown concentration determined
All 6 post-lab questions answered completely
Workspace cleaned, solutions disposed properly
Equipment returned

SUBMIT YOUR LAB

SUBMISSION INSTRUCTIONS
  1. Review all sections to ensure completeness
  2. Click "Download PDF" to save your completed lab
  3. Upload the PDF to Canvas
LAB SUMMARY

Student: --

Date: --

Section: --

\(I_0\) (Blank): --

\(R^2\): --

Unknown Concentration: -- %

NOTE: Your data is automatically saved to your browser's local storage. You can close this page and return later to continue working.

INSTRUCTOR TEACHING MATERIALS

This section is for instructor use only. Do not distribute to students.

Pre-Lab Discussion Points

  • Beer's Law foundations: Review the relationship between absorbance, concentration, and path length. Emphasize that \(A = \varepsilon \cdot l \cdot c\) only holds under certain conditions (dilute solutions, monochromatic light, no chemical reactions).
  • Color theory: Discuss complementary colors. Purple absorbs green/yellow; using green paper maximizes the signal.
  • Smartphone colorimetry: RGB apps read RGB values from the camera sensor. Each channel (R, G, B) represents intensity of that color component (0-255 scale).
  • Error sources: Auto-exposure, ambient light changes, inconsistent sample positioning, fingerprints on cuvettes, bubbles in solutions.

Common Student Mistakes

  1. Forgetting to lock exposure: Auto-exposure adjusts between measurements, ruining the calibration. Have students test with blank before and after to verify consistency.
  2. Inconsistent sample positioning: Emphasize marking the exact cuvette position and orientation.
  3. Not measuring blank first: \(I_0\) must be measured before any samples.
  4. Mixing up transmittance and absorbance: \(T = I/I_0\) (fraction), \(A = -\log(T)\). Absorbance increases with concentration; transmittance decreases.
  5. Calculation errors: Check that students are using \(\log_{10}\), not natural log (\(\ln\)).
  6. Negative absorbance values: Indicates \(I > I_0\), usually due to light changes or measurement error.

Timing Guidelines

  • Pre-lab review and safety: 10-15 min
  • Box construction: 15-20 min
  • Dilution preparation: 15-20 min
  • Data collection: 20-30 min
  • Calculations and graphing: 15-20 min
  • Post-lab questions: 15-20 min
  • Total: approximately 2 hours

Unknown Sample Preparation

RECOMMENDED UNKNOWN CONCENTRATIONS

Prepare unknowns at concentrations that fall within the calibration range but are NOT identical to any standard:

  • Unknown A: 35% grape juice
  • Unknown B: 55% grape juice
  • Unknown C: 75% grape juice
  • Unknown D: 25% grape juice

Preparation for 50 mL of 35% unknown:

17.5 mL grape juice + 32.5 mL water = 50 mL at 35%

Assessment Rubric

Component Points Criteria
Pre-lab Questions 15 Complete and correct answers showing understanding
Data Collection 25 Complete data table, reasonable values, proper calculations
Calibration Curve 20 Correct axes, linear trend, \(R^2 > 0.95\)
Unknown Determination 15 Correct method, within +/- 10% of actual value
Post-lab Questions 20 Thoughtful, complete answers demonstrating understanding
Lab Technique 5 Safety, cleanliness, proper procedure
Total 100

Extension Activities

  1. Different colored solutions: Test food coloring solutions with appropriate background paper (red food coloring with cyan/blue paper, measuring red channel).
  2. Wavelength dependence: Use different colored papers to show how absorbance changes with wavelength.
  3. Real-world applications: Discuss pulse oximetry, water quality testing, clinical chemistry analyzers.
  4. Beer's Law deviations: Prepare solutions beyond 100% (if possible with concentrated stock) to demonstrate non-linearity at high concentrations.

INSTRUCTOR ANSWER KEY

CONFIDENTIAL - For instructor use only. Contains hypothetical realistic data and expected answers.

Hypothetical Data Set

SAMPLE DATA (Using \(I_0 = 185\))
Sample Conc. (%) \(I\) (Avg) \(T\) \(A\)
Blank 0 185 1.000 0.000
Std 1 20 152 0.822 0.085
Std 2 40 124 0.670 0.174
Std 3 60 98 0.530 0.276
Std 4 80 76 0.411 0.386
Std 5 100 58 0.314 0.503
Unknown ~55% 105 0.568 0.246
CALIBRATION CURVE

Equation: \(A = 0.005 \cdot C\)

\(R^2\): 0.998

UNKNOWN CALCULATION

Given: \(A_{\text{unknown}} = 0.246\)

Using: \(C = \frac{A - b}{m}\)

\(C = \frac{0.246 - 0.0032}{0.00497}\)

\(C = \frac{0.2428}{0.00497}\)

\(C = 48.9\%\) (approximately 49%)

If actual unknown was 55%: percent error = \(\frac{|49-55|}{55} \times 100 = 10.9\%\)

Pre-Lab Question Answers

Q1: Beer's Law

\(A = \varepsilon \cdot l \cdot c\)

\(A\) = absorbance (unitless)

\(\varepsilon\) = molar absorptivity (L·mol⁻¹·cm⁻¹)

\(l\) = path length (cm)

\(c\) = concentration (mol/L or %)

Q2: Calculation

a) \(T = I/I_0 = 100/200 = 0.50\)

b) \(A = -\log_{10}(0.50) = -(-0.301) = 0.301\)

Q3: Color Absorption

Grape juice absorbs primarily GREEN/YELLOW light (complementary to purple/violet). We use green construction paper because it provides green light that will be absorbed by the grape juice. The more concentrated the grape juice, the more green light is absorbed, giving us a measurable signal change.

Q4: RGB Channel

The GREEN channel should show the greatest change. Since grape juice absorbs green light, as concentration increases, less green light passes through. The green channel reading will decrease from high (blank) to low (100% grape juice).

Q5: Real-World Applications

Accept any two valid applications:

  • Pulse oximetry (blood oxygen monitoring)
  • Clinical chemistry (blood/urine analysis)
  • Water quality testing
  • Food quality control
  • Drug analysis
  • Environmental monitoring
  • DNA/protein quantification

Post-Lab Question Answers

Q1: Error Sources

Accept any two valid errors with explanations:

  • Ambient light fluctuations: Changes in room light during measurements would cause inconsistent readings, leading to scatter in the data and poor R-squared.
  • Fingerprints or bubbles: Contaminants on cuvettes scatter light, causing artificially low transmittance readings and higher apparent absorbance.
  • Inconsistent sample volume: Different fill levels change the path length, affecting absorbance values non-uniformly.
  • Temperature changes: Solution properties can change with temperature, affecting absorbance.
  • Inaccurate dilutions: Errors in volumetric measurements affect the actual concentrations, causing deviation from expected linear relationship.
Q2: Clinical Application

Jaundice (bilirubin) absorbs blue light, which could interfere with the pulse oximeter's measurements. The additional light absorption might be misinterpreted as deoxygenated hemoglobin, potentially causing falsely low SpO2 readings. Clinicians can: (1) use co-oximetry which measures at more wavelengths, (2) draw arterial blood gas for direct measurement, (3) apply correction factors if bilirubin levels are known, or (4) use newer devices with additional wavelengths designed to account for interfering substances.

Q3: Y-Intercept

Ideally the curve passes through origin (0,0) because zero concentration should give zero absorbance. A non-zero y-intercept could be caused by: (1) stray light in the colorimeter, (2) blank solution contamination, (3) light leaks in the box, (4) reflection/scattering from cuvette walls, or (5) systematic measurement error in all readings.

Q4: Beer's Law Deviations

At very high concentrations, Beer's Law deviates from linearity and the calibration curve would level off (plateau). This occurs because: (1) molecules interact with each other at high concentrations, changing their absorption properties, (2) solute-solute interactions alter the local environment, (3) refractive index changes significantly, and (4) the solution may become saturated. This is called "positive deviation" from Beer's Law.

Q5: Yellow Solution

a) Blue or violet construction paper (complementary color to yellow)

b) Blue channel

c) Yellow solutions absorb blue/violet light. Using blue paper as the background provides blue light that will be absorbed by the yellow solution. The blue channel reading will decrease as yellow solution concentration increases, giving us the greatest dynamic range for measurement.

Q6: Negative Absorbance

Negative absorbance means \(I > I_0\) (sample reading higher than blank). Possible causes: (1) blank was measured incorrectly or at a different time when lighting was different, (2) auto-exposure adjusted between measurements, (3) sample cuvette was cleaner than blank cuvette, (4) sample position was different (closer to light source), (5) blank solution was accidentally contaminated. To troubleshoot: re-measure blank and sample immediately after each other, verify exposure is locked, check cuvette cleanliness, mark exact sample position.

DILUTION VERIFICATION ANSWERS

\(C_1 = 100\%\), \(V_1 = 4\) mL, \(C_2 = 40\%\), \(V_2 = 10\) mL

Verification: \(100 \times 4 = 40 \times 10 = 400\)